Transcript: ENST00000416062.1 GALNTL5-002

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 [Source:HGNC Symbol;Acc:21725]

Gene Synonyms

GALNACT19, GALNT15

Location

Chromosome 7: 151,653,487-151,716,941 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 28457 variant alleles and maps to 371 oligo probes.

Gene

This transcript is a product of gene ENSG00000106648.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392800.2	GALNTL5-001	1719	443aa	ENSP00000376548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5929	Q7Z4T8	NM_145292.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431418.2	GALNTL5-008	1678	443aa	ENSP00000392582.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5929	Q7Z4T8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416269.2	GALNTL5-004	2272	130aa	ENSP00000398570.2	Nonsense mediated decay		D3DX14	-	-
ENST00000414073.2	GALNTL5-006	2097	130aa	ENSP00000414260.2	Nonsense mediated decay		D3DX14	-	-
ENST00000426341.2	GALNTL5-003	1808	130aa	ENSP00000406595.2	Nonsense mediated decay		D3DX14	-	-
ENST00000448366.2	GALNTL5-005	1427	133aa	ENSP00000400106.2	Nonsense mediated decay		Q7Z4T8	-	-
ENST00000416062.1	GALNTL5-002	1344	133aa	ENSP00000411071.1	Nonsense mediated decay		Q7Z4T8	-	-
ENST00000483959.1	GALNTL5-010	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482845.2	GALNTL5-007	762	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468278.1	GALNTL5-009	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 1,344 bps, Translation length: 133 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z4T8

Version

ENST00000416062.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000348396 (version 1)

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Transcript: ENST00000416062.1 GALNTL5-002

Summary