Transcript: ENST00000462754.1 TMEM106B-008

Description

transmembrane protein 106B [Source:HGNC Symbol;Acc:22407]

Gene Synonyms

FLJ11273, MGC33727

Location

Chromosome 7: 12,269,984-12,272,026 forward strand.

About this transcript

This transcript has 3 exons, is associated with 978 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSG00000106460.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396667.3	TMEM106B-001	12539	274aa	ENSP00000379901.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5358	C9J998 C9JZ87 Q9NUM4	NM_018374.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396668.3	TMEM106B-002	2126	274aa	ENSP00000379902.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5358	C9J998 C9JZ87 Q9NUM4	NM_001134232.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444443.1	TMEM106B-004	584	110aa	ENSP00000401302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J998 C9JZ87	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442107.1	TMEM106B-006	496	25aa	ENSP00000391985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J998	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420833.1	TMEM106B-003	1492	104aa	ENSP00000391016.1	Nonsense mediated decay		C9J998 F2Z3N7	-	-
ENST00000453686.1	TMEM106B-005	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462754.1	TMEM106B-008	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492762.1	TMEM106B-007	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 699 bps,

Version

ENST00000462754.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325869 (version 1)

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Transcript: ENST00000462754.1 TMEM106B-008

Summary