Transcript: ENST00000396667.3 TMEM106B-001

Description

transmembrane protein 106B [Source:HGNC Symbol;Acc:22407]

Gene Synonyms

FLJ11273, MGC33727

Location

Chromosome 7: 12,250,926-12,282,993 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 15909 variant alleles and maps to 662 oligo probes.

Gene

This transcript is a product of gene ENSG00000106460.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396667.3	TMEM106B-001	12539	274aa	ENSP00000379901.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5358	C9J998 C9JZ87 Q9NUM4	NM_018374.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396668.3	TMEM106B-002	2126	274aa	ENSP00000379902.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5358	C9J998 C9JZ87 Q9NUM4	NM_001134232.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444443.1	TMEM106B-004	584	110aa	ENSP00000401302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J998 C9JZ87	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442107.1	TMEM106B-006	496	25aa	ENSP00000391985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J998	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420833.1	TMEM106B-003	1492	104aa	ENSP00000391016.1	Nonsense mediated decay		C9J998 F2Z3N7	-	-
ENST00000453686.1	TMEM106B-005	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462754.1	TMEM106B-008	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492762.1	TMEM106B-007	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 12,539 bps, Translation length: 274 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NUM4

CCDS

This transcript is a member of the Human CCDS set: CCDS5358

Version

ENST00000396667.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000246870 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396667.3 TMEM106B-001

Summary