Transcript: ENST00000402468.3 C1GALT1-003

Description

core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337]

Gene Synonyms

C1GALT, T-synthase

Location

Chromosome 7: 7,273,951-7,278,595 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 2306 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSG00000106392.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436587.2	C1GALT1-201	6208	363aa	ENSP00000389176.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5355	C9JDX1 C9K0C8 Q9NS00	NM_020156.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000223122.3	C1GALT1-001	6078	363aa	ENSP00000223122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5355	C9JDX1 C9K0C8 Q9NS00	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402468.3	C1GALT1-003	930	309aa	ENSP00000384550.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDX1 C9K0C8 Q9NS00	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429911.1	C1GALT1-006	802	131aa	ENSP00000407666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDX1 C9K0C8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419721.1	C1GALT1-004	591	100aa	ENSP00000415400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467716.1	C1GALT1-005	458	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476068.1	C1GALT1-002	1186	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 930 bps, Translation length: 309 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NS00

Version

ENST00000402468.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000324381 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000402468.3 C1GALT1-003

Summary