Transcript: ENST00000487602.1 RBM28-006

Description

RNA binding motif protein 28 [Source:HGNC Symbol;Acc:21863]

Gene Synonyms

FLJ10377

Location

Chromosome 7: 127,963,612-127,977,214 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 5710 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000106344.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000223073.2	RBM28-001	15507	759aa	ENSP00000223073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5801	Q9NW13	NM_018077.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415472.2	RBM28-002	2251	618aa	ENSP00000390517.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55159	Q9NW13	NM_001166135.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478061.1	RBM28-005	932	283aa	ENSP00000418071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAA9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000459726.1	RBM28-003	728	204aa	ENSP00000420503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JE21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487602.1	RBM28-006	715	186aa	ENSP00000419840.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481788.1	RBM28-007	1052	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488249.1	RBM28-004	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495327.1	RBM28-008	395	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 715 bps, Translation length: 186 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000487602.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000349447 (version 1)

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Transcript: ENST00000487602.1 RBM28-006

Summary