Transcript: ENST00000389266.3 GARS-001

Description

glycyl-tRNA synthetase [Source:HGNC Symbol;Acc:4162]

Gene Synonyms

CMT2D, DSMAV, GlyRS, HMN5, SMAD1

Location

Chromosome 7: 30,634,297-30,673,649 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 30 domains and features, is associated with 16607 variant alleles and maps to 710 oligo probes.

Gene

This transcript is a product of gene ENSG00000106105.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389266.3	GARS-001	2634	739aa	ENSP00000373918.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43564	P41250 Q75MN1	NM_002047.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454308.1	GARS-003	814	79aa	ENSP00000392677.1	Nonsense mediated decay		F8WCK4	-	-
ENST00000444666.1	GARS-006	619	77aa	ENSP00000415447.1	Nonsense mediated decay		H7C443	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478124.1	GARS-002	1877	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496643.1	GARS-009	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485784.1	GARS-008	761	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484093.1	GARS-005	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470392.1	GARS-004	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465748.1	GARS-007	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,634 bps, Translation length: 739 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41250

CCDS

This transcript is a member of the Human CCDS set: CCDS43564

Version

ENST00000389266.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000327735 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000389266.3 GARS-001

Summary