Transcript: ENST00000423334.2 NOD1-201

Description

nucleotide-binding oligomerization domain containing 1 [Source:HGNC Symbol;Acc:16390]

Gene Synonyms

CARD4, CLR7.1, NLRC1

Location

Chromosome 7: 30,491,752-30,518,312 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 11030 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSG00000106100.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222823.4	NOD1-001	4499	953aa	ENSP00000222823.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5427	C9J8X8 Q7Z2K1 Q9Y239	NM_006092.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423334.2	NOD1-201	1587	249aa	ENSP00000409416.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTU3 C9J8X8 Q7Z2K1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411552.1	NOD1-004	794	59aa	ENSP00000396046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419799.1	NOD1-005	757	59aa	ENSP00000395551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413433.1	NOD1-006	637	59aa	ENSP00000399505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419601.1	NOD1-007	578	45aa	ENSP00000410917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434755.1	NOD1-002	4610	779aa	ENSP00000416946.1	Nonsense mediated decay		C9J8X8 G3XAL1 Q7Z2K1	-	-
ENST00000489614.1	NOD1-003	3098	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467706.1	NOD1-008	905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 1,587 bps, Translation length: 249 residues

Version

ENST00000423334.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000423334.2 NOD1-201

Summary