Transcript: ENST00000489856.1 CAV1-005

Description

caveolin 1, caveolae protein, 22kDa [Source:HGNC Symbol;Acc:1527]

Gene Synonyms

BSCL3, CAV, CGL3, MSTP085, PPH3, VIP21

Location

Chromosome 7: 116,165,066-116,167,072 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1170 variant alleles and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSG00000105974.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341049.2	CAV1-001	2704	178aa	ENSP00000339191.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5767	C9JKI3 Q03135 Q2TNI1	NM_001753.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393467.1	CAV1-003	2628	147aa	ENSP00000377110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55156	C9JKI3 Q03135	NM_001172896.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405348.1	CAV1-008	2443	147aa	ENSP00000384348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55156	C9JKI3 Q03135	NM_001172897.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393468.1	CAV1-004	845	147aa	ENSP00000377111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55156	C9JKI3 Q03135	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393470.1	CAV1-006	598	167aa	ENSP00000377113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKI3 E9PCT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456473.1	CAV1-007	557	138aa	ENSP00000389033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKI3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451122.1	CAV1-002	1653	86aa	ENSP00000409541.1	Nonsense mediated decay		F8WDM7	-	-
ENST00000489856.1	CAV1-005	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 575 bps,

Version

ENST00000489856.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000315775 (version 1)

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Transcript: ENST00000489856.1 CAV1-005

Summary