Transcript: ENST00000262631.5 SCN1B-001

Description

sodium channel, voltage-gated, type I, beta subunit [Source:HGNC Symbol;Acc:10586]

Gene Synonyms

ATFB13, BRGDA5, GEFSP1

Location

Chromosome 19: 35,521,588-35,531,352 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 4709 variant alleles and maps to 344 oligo probes.

Gene

This transcript is a product of gene ENSG00000105711.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000415950.3	SCN1B-003	979	268aa	ENSP00000396915.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46047	Q07699	NM_199037.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262631.5	SCN1B-001	1451	218aa	ENSP00000262631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12441	Q07699 Q8WU42	NM_001037.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000595652.1	SCN1B-002	814	147aa	ENSP00000468848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596348.1	SCN1B-005	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602150.1	SCN1B-004	3460	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,451 bps, Translation length: 218 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q07699

CCDS

This transcript is a member of the Human CCDS set: CCDS12441

Version

ENST00000262631.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000461567 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000262631.5 SCN1B-001

Summary