Transcript: ENST00000391758.1 TFPT-002

Description

TCF3 (E2A) fusion partner (in childhood Leukemia) [Source:HGNC Symbol;Acc:13630]

Gene Synonyms

FB1, INO80F, amida

Location

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 4593 variant alleles and maps to 269 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000391759.1	TFPT-003	1205	253aa	ENSP00000375639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12878	G5E9B5 P0C1Z6	NM_013342.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391758.1	TFPT-002	804	244aa	ENSP00000375638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E9B5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391757.1	TFPT-005	774	193aa	ENSP00000375637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MTQ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420715.2	TFPT-006	737	105aa	ENSP00000395180.1	Nonsense mediated decay		F8WDC1	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 804 bps, Translation length: 244 residues

Version

ENST00000391758.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000141214 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.