Transcript: ENST00000604324.1 CRX-008

Description

cone-rod homeobox [Source:HGNC Symbol;Acc:2383]

Gene Synonyms

CORD2, CRD, LCA7, OTX3

Location

Chromosome 19: 48,323,801-48,325,267 forward strand.

About this transcript

This transcript has 1 exon, is associated with 648 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSG00000105392.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221996.7	CRX-001	4469	299aa	ENSP00000221996.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12706	A4GUB7 H3BUU7 O43186 Q0QD45	NM_000554.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539067.1	CRX-201	2275	299aa	ENSP00000445565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12706	A4GUB7 H3BUU7 O43186 Q0QD45	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566686.1	CRX-005	759	55aa	ENSP00000457808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUU7 Q0QD45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602001.1	CRX-007	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556527.1	CRX-004	164	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000604324.1	CRX-008	1467	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 1,467 bps,

Version

ENST00000604324.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000469976 (version 1)

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Transcript: ENST00000604324.1 CRX-008

Summary