Transcript: ENST00000221996.7 CRX-001

Description

cone-rod homeobox [Source:HGNC Symbol;Acc:2383]

Gene Synonyms

CORD2, CRD, LCA7, OTX3

Location

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 10962 variant alleles and maps to 472 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221996.7	CRX-001	4469	299aa	ENSP00000221996.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12706	A4GUB7 H3BUU7 O43186 Q0QD45	NM_000554.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539067.1	CRX-201	2275	299aa	ENSP00000445565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12706	A4GUB7 H3BUU7 O43186 Q0QD45	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566686.1	CRX-005	759	55aa	ENSP00000457808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUU7 Q0QD45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602001.1	CRX-007	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556527.1	CRX-004	164	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000604324.1	CRX-008	1467	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 4,469 bps, Translation length: 299 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43186

CCDS

This transcript is a member of the Human CCDS set: CCDS12706

Version

ENST00000221996.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000409812 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.