Transcript: ENST00000589158.1 CLPTM1-007

Description

cleft lip and palate associated transmembrane protein 1 [Source:HGNC Symbol;Acc:2087]

Location

Chromosome 19: 45,487,544-45,490,648 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1375 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSG00000104853.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337392.5	CLPTM1-001	2604	669aa	ENSP00000336994.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12651	B4DDS3 K7EKQ7 O96005	NM_001294.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541297.2	CLPTM1-004	2732	655aa	ENSP00000442011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDS3 F5H8J3 K7EKQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546079.1	CLPTM1-002	2342	567aa	ENSP00000443192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDS3 K7EKQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586915.1	CLPTM1-010	775	209aa	ENSP00000468310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585961.1	CLPTM1-005	572	18aa	ENSP00000465731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591304.1	CLPTM1-006	528	171aa	ENSP00000467927.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQQ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589347.1	CLPTM1-011	638	152aa	ENSP00000464985.1	Nonsense mediated decay		K7EJ16	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589158.1	CLPTM1-007	749	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588855.1	CLPTM1-003	1522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588274.1	CLPTM1-008	805	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587537.1	CLPTM1-012	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586975.1	CLPTM1-009	720	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 749 bps,

Version

ENST00000589158.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000453272 (version 1)

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Transcript: ENST00000589158.1 CLPTM1-007

Summary