Transcript: ENST00000523569.1 CHRAC1-005

Description

chromatin accessibility complex 1 [Source:HGNC Symbol;Acc:13544]

Gene Synonyms

CHARC1, CHARC15, CHRAC-1, CHRAC-15, CHRAC15, YCL1

Location

Chromosome 8: 141,524,393-141,525,640 forward strand.

About this transcript

This transcript has 2 exons, is associated with 608 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000104472.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220913.5	CHRAC1-001	2488	131aa	ENSP00000220913.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6379	Q9NRG0	NM_017444.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519533.1	CHRAC1-002	1678	56aa	ENSP00000428697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518971.1	CHRAC1-003	925	80aa	ENSP00000430484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBX4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519618.1	CHRAC1-004	811	97aa	ENSP00000430003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523569.1	CHRAC1-005	618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 618 bps,

Version

ENST00000523569.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000377828 (version 1)

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Transcript: ENST00000523569.1 CHRAC1-005

Summary