Transcript: ENST00000520317.1 IL7-006

Description

interleukin 7 [Source:HGNC Symbol;Acc:6023]

Gene Synonyms

IL-7

Location

Chromosome 8: 79,645,900-79,717,686 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 28887 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000104432.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263851.4	IL7-001	2076	177aa	ENSP00000263851.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6224	D0EYG7 P13232 Q5FBY8	NM_001199887.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379113.2	IL7-201	817	71aa	ENSP00000368408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5FBY3 Q5FBY8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520269.1	IL7-004	456	133aa	ENSP00000427750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56541	P13232 Q5FBX5 Q5FBY8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541183.1	IL7-202	195	64aa	ENSP00000438922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P13232	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518982.1	IL7-002	1940	71aa	ENSP00000430272.1	Nonsense mediated decay		Q5FBY3 Q5FBY8	-	-
ENST00000520317.1	IL7-006	1055	37aa	ENSP00000427800.1	Nonsense mediated decay		Q5FBY6 Q5FBY8	-	-
ENST00000520215.1	IL7-005	400	37aa	ENSP00000428364.1	Nonsense mediated decay		Q5FBY6 Q5FBY8	-	-
ENST00000519833.1	IL7-008	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523959.1	IL7-007	635	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521323.1	IL7-003	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 1,055 bps, Translation length: 37 residues

Version

ENST00000520317.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000379433 (version 1)

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Transcript: ENST00000520317.1 IL7-006

Summary