Transcript: ENST00000520596.2 TRPA1-007

Description

transient receptor potential cation channel, subfamily A, member 1 [Source:HGNC Symbol;Acc:497]

Gene Synonyms

ANKTM1, FEPS

Location

Chromosome 8: 72,935,364-72,936,105 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 297 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSG00000104321.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262209.4	TRPA1-001	5223	1119aa	ENSP00000262209.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34908	O75762	NM_007332.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523582.1	TRPA1-002	2812	916aa	ENSP00000428151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAW0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519720.1	TRPA1-006	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520596.2	TRPA1-007	484	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520788.1	TRPA1-004	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522271.1	TRPA1-005	366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 484 bps,

Version

ENST00000520596.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000379106 (version 2)

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Transcript: ENST00000520596.2 TRPA1-007

Summary