Transcript: ENST00000560301.1 DNAJC17-002

Description

DnaJ (Hsp40) homolog, subfamily C, member 17 [Source:HGNC Symbol;Acc:25556]

Gene Synonyms

FLJ10634

Location

Chromosome 15: 41,067,456-41,099,675 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 14086 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000104129.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220496.4	DNAJC17-001	1017	304aa	ENSP00000220496.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10065	Q9NVM6	NM_018163.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559238.1	DNAJC17-005	1341	102aa	ENSP00000453354.1	Nonsense mediated decay		H0YLV4	-	-
ENST00000560645.1	DNAJC17-004	903	143aa	ENSP00000452716.1	Nonsense mediated decay		H0YK99	-	-
ENST00000561018.1	DNAJC17-003	880	131aa	ENSP00000453298.1	Nonsense mediated decay		H0YLQ7	-	-
ENST00000559310.1	DNAJC17-006	792	131aa	ENSP00000454082.1	Nonsense mediated decay		H0YLQ7	-	-
ENST00000560065.2	DNAJC17-011	704	125aa	ENSP00000473912.1	Nonsense mediated decay		S4R343	-	-
ENST00000558727.1	DNAJC17-010	507	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561044.1	DNAJC17-007	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560301.1	DNAJC17-002	987	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561110.1	DNAJC17-009	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558769.1	DNAJC17-008	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 987 bps,

Version

ENST00000560301.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418990 (version 1)

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Transcript: ENST00000560301.1 DNAJC17-002

Summary