Transcript: ENST00000378844.1 FERMT1-004

Description

fermitin family member 1 [Source:HGNC Symbol;Acc:15889]

Gene Synonyms

C20orf42, DTGCU2, FLJ20116, KIND1, UNC112A, URP1

Location

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 3389 variant alleles and maps to 153 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000217289.4	FERMT1-001	5151	677aa	ENSP00000217289.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13098	G3V1L6 Q5JWV4 Q9BQL6	NM_017671.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536936.1	FERMT1-201	3229	420aa	ENSP00000441063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1L6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378844.1	FERMT1-004	567	146aa	ENSP00000368121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JWV4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478194.1	FERMT1-002	3322	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 567 bps, Translation length: 146 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000378844.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000077911 (version 1)