Transcript: ENST00000216797.5 NFKBIA-001

Description

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha [Source:HGNC Symbol;Acc:7797]

Gene Synonyms

IKBA, IkappaBalpha, MAD-3, MAD3, NFKBI

Location

Chromosome 14: 35,870,717-35,873,952 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 2918 variant alleles and maps to 402 oligo probes.

Gene

This transcript is a product of gene ENSG00000100906.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216797.5	NFKBIA-001	1558	317aa	ENSP00000216797.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9656	G3V286 P25963 Q9UGJ5	NM_020529.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557389.1	NFKBIA-004	1537	227aa	ENSP00000450514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V286 Q9UGJ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557140.1	NFKBIA-002	1400	274aa	ENSP00000451257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3I4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553342.1	NFKBIA-011	212	68aa	ENSP00000451281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554001.1	NFKBIA-003	1396	82aa	ENSP00000450537.1	Nonsense mediated decay		G3V2A2	-	-
ENST00000557100.1	NFKBIA-010	825	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557459.1	NFKBIA-008	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555371.1	NFKBIA-006	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555629.1	NFKBIA-005	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556664.1	NFKBIA-007	381	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,558 bps, Translation length: 317 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P25963

CCDS

This transcript is a member of the Human CCDS set: CCDS9656

Version

ENST00000216797.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276683 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000216797.5 NFKBIA-001

Summary