Transcript: ENST00000554012.1 TCL1A-001

Description

T-cell leukemia/lymphoma 1A [Source:HGNC Symbol;Acc:11648]

Gene Synonyms

TCL1

Location

Chromosome 14: 96,176,304-96,180,533 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3262 variant alleles and maps to 417 oligo probes.

Gene

This transcript is a product of gene ENSG00000100721.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402399.1	TCL1A-201	1395	114aa	ENSP00000385036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9941	P56279	NM_021966.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554012.1	TCL1A-001	1391	114aa	ENSP00000451506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9941	P56279	NM_001098725.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557043.1	TCL1A-007	980	89aa	ENSP00000452028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556450.1	TCL1A-005	872	114aa	ENSP00000450701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9941	P56279	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555202.1	TCL1A-002	717	114aa	ENSP00000450496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9941	P56279	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554119.1	TCL1A-006	913	46aa	ENSP00000450997.1	Nonsense mediated decay		G3V4T4	-	-
ENST00000556156.1	TCL1A-004	882	46aa	ENSP00000451322.1	Nonsense mediated decay		G3V4T4	-	-
ENST00000555886.1	TCL1A-003	813	46aa	ENSP00000451973.1	Nonsense mediated decay		G3V4T4	-	-
ENST00000553467.1	TCL1A-008	368	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,391 bps, Translation length: 114 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P56279

CCDS

This transcript is a member of the Human CCDS set: CCDS9941

Version

ENST00000554012.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413245 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000554012.1 TCL1A-001

Summary