Transcript: ENST00000554079.1 SIX4-002

Description

SIX homeobox 4 [Source:HGNC Symbol;Acc:10890]

Gene Synonyms

AREC3

Location

About this transcript

This transcript has 4 exons, is associated with 4590 variant alleles and maps to 186 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216513.4	SIX4-001	6285	781aa	ENSP00000216513.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9749	Q9UIU6	NM_017420.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556952.3	SIX4-004	1573	494aa	ENSP00000450761.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2N2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554079.1	SIX4-002	2003	45aa	ENSP00000451537.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,003 bps, Translation length: 45 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000554079.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412761 (version 3)