Transcript: ENST00000216513.4 SIX4-001

Description

SIX homeobox 4 [Source:HGNC Symbol;Acc:10890]

Gene Synonyms

AREC3

Location

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 6694 variant alleles and maps to 362 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216513.4	SIX4-001	6285	781aa	ENSP00000216513.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9749	Q9UIU6	NM_017420.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556952.3	SIX4-004	1573	494aa	ENSP00000450761.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2N2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554079.1	SIX4-002	2003	45aa	ENSP00000451537.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 6,285 bps, Translation length: 781 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UIU6

CCDS

This transcript is a member of the Human CCDS set: CCDS9749

Version

ENST00000216513.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000072397 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.