Transcript: ENST00000606400.1 CDC34-010

Description

cell division cycle 34 [Source:HGNC Symbol;Acc:1734]

Gene Synonyms

E2-CDC34, UBC3, UBCH3, UBE2R1

Location

Chromosome 19: 536,994-542,097 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 3612 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSG00000099804.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215574.4	CDC34-001	1469	236aa	ENSP00000215574.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12030	P49427	NM_004359.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586283.2	CDC34-007	945	136aa	ENSP00000475282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KPV8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606136.1	CDC34-011	612	137aa	ENSP00000475730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606065.1	CDC34-012	560	119aa	ENSP00000475610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQ77	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000607527.1	CDC34-008	348	104aa	ENSP00000476107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQP9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000607629.1	CDC34-009	330	102aa	ENSP00000475607.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593036.2	CDC34-006	281	8aa	ENSP00000476207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606400.1	CDC34-010	595	71aa	ENSP00000476129.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586788.1	CDC34-002	900	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 595 bps, Translation length: 71 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000606400.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000471239 (version 1)

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Transcript: ENST00000606400.1 CDC34-010

Summary