Transcript: ENST00000572795.1 PITPNM3-003

Description

PITPNM family member 3 [Source:HGNC Symbol;Acc:21043]

Gene Synonyms

ACKR6, CORD5, NIR1, RDGBA3

Location

Chromosome 17: 6,358,720-6,385,149 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 12200 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSG00000091622.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262483.8	PITPNM3-001	7086	974aa	ENSP00000262483.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11076	Q9BZ71	NM_031220.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421306.3	PITPNM3-002	6945	938aa	ENSP00000407882.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54080	-	NM_001165966.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575201.2	PITPNM3-005	734	116aa	ENSP00000458901.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000576664.1	PITPNM3-004	1621	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572795.1	PITPNM3-003	5369	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 5,369 bps,

Version

ENST00000572795.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000439817 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000572795.1 PITPNM3-003

Summary