Transcript: ENST00000319332.5 LEPREL1-001

Description

leprecan-like 1 [Source:HGNC Symbol;Acc:19317]

Gene Synonyms

FLJ10718, MCVD, MLAT4, P3H2

Location

Chromosome 3: 189,674,517-189,838,718 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 20 domains and features, is associated with 72152 variant alleles and maps to 643 oligo probes.

Gene

This transcript is a product of gene ENSG00000090530.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319332.5	LEPREL1-001	3509	708aa	ENSP00000316881.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3294	C9J313 C9JSL4 D3DNV8 Q8IVL5	NM_018192.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427335.2	LEPREL1-002	2963	527aa	ENSP00000408947.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46981	C9J313 C9JSL4 D3DNV8	NM_001134418.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426003.1	LEPREL1-003	609	134aa	ENSP00000394326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JSL4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444866.1	LEPREL1-004	544	137aa	ENSP00000391374.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J313 C9JSL4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482780.1	LEPREL1-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463171.1	LEPREL1-010	754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470925.1	LEPREL1-005	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467131.1	LEPREL1-008	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475095.1	LEPREL1-006	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490940.1	LEPREL1-009	472	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,509 bps, Translation length: 708 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IVL5

CCDS

This transcript is a member of the Human CCDS set: CCDS3294

Version

ENST00000319332.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000343855 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000319332.5 LEPREL1-001

Summary