Transcript: ENST00000490329.1 SLC9A1-006

Description

solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 [Source:HGNC Symbol;Acc:11071]

Gene Synonyms

APNH, APNH1, NHE-1, NHE1

Location

Chromosome 1: 27,425,307-27,426,173 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 425 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSG00000090020.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263980.3	SLC9A1-001	4516	815aa	ENSP00000263980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS295	B1ALD5 B4DTZ6 P19634	NM_003047.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545949.1	SLC9A1-201	2355	476aa	ENSP00000445520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374086.3	SLC9A1-002	2183	555aa	ENSP00000363199.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALD5 P19634	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374084.2	SLC9A1-004	695	135aa	ENSP00000363197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALD5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490329.1	SLC9A1-006	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000374089.1	SLC9A1-003	3165	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000447808.1	SLC9A1-005	887	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 660 bps,

Version

ENST00000490329.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000096876 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000490329.1 SLC9A1-006

Summary