Transcript: ENST00000263980.3 SLC9A1-001

Description

solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 [Source:HGNC Symbol;Acc:11071]

Gene Synonyms

APNH, APNH1, NHE-1, NHE1

Location

Chromosome 1: 27,425,306-27,481,401 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 39 domains and features, is associated with 23974 variant alleles and maps to 687 oligo probes.

Gene

This transcript is a product of gene ENSG00000090020.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263980.3	SLC9A1-001	4516	815aa	ENSP00000263980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS295	B1ALD5 B4DTZ6 P19634	NM_003047.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545949.1	SLC9A1-201	2355	476aa	ENSP00000445520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374086.3	SLC9A1-002	2183	555aa	ENSP00000363199.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALD5 P19634	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374084.2	SLC9A1-004	695	135aa	ENSP00000363197.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1ALD5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490329.1	SLC9A1-006	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000374089.1	SLC9A1-003	3165	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000447808.1	SLC9A1-005	887	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,516 bps, Translation length: 815 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19634

CCDS

This transcript is a member of the Human CCDS set: CCDS295

Version

ENST00000263980.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000012336 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000263980.3 SLC9A1-001

Summary