Transcript: ENST00000338523.4 SNX10-002

Description

sorting nexin 10 [Source:HGNC Symbol;Acc:14974]

Gene Synonyms

OPTB8

Location

Chromosome 7: 26,331,543-26,413,945 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 34251 variant alleles and maps to 459 oligo probes.

Gene

This transcript is a product of gene ENSG00000086300.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338523.4	SNX10-002	2546	201aa	ENSP00000343709.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5399	G5E9H5 Q75MD2 Q75MY3 Q9Y5X0	NM_013322.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396376.1	SNX10-001	2491	201aa	ENSP00000379661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5399	G5E9H5 Q75MD2 Q75MY3 Q9Y5X0	NM_001199837.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409838.1	SNX10-004	944	117aa	ENSP00000386540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56470	Q75MY3 Q9Y5X0	NM_001199838.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446848.2	SNX10-201	880	227aa	ENSP00000395474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJM0 C9JQ16 C9JUQ6 G5E9H5 Q75MY3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416246.1	SNX10-005	823	197aa	ENSP00000408164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQ16 C9JUQ6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000409367.1	SNX10-007	746	161aa	ENSP00000387274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E9H5 Q75MY3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412416.1	SNX10-006	429	53aa	ENSP00000393690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUQ6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462993.1	SNX10-003	806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,546 bps, Translation length: 201 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5X0

CCDS

This transcript is a member of the Human CCDS set: CCDS5399

Version

ENST00000338523.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000214120 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338523.4 SNX10-002

Summary