Transcript: ENST00000565038.1 PALB2-004

Description

partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:26144]

Gene Synonyms

FANCN, FLJ21816, PNCA3

Location

About this transcript

This transcript has 4 exons, is associated with 12417 variant alleles and maps to 103 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261584.4	PALB2-001	4003	1186aa	ENSP00000261584.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32406	Q86YC2	NM_024675.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561514.1	PALB2-006	815	89aa	ENSP00000460666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3R6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566069.1	PALB2-005	619	43aa	ENSP00000459237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568219.1	PALB2-002	3963	35aa	ENSP00000454703.1	Nonsense mediated decay		H3BN63	-	-
ENST00000567003.1	PALB2-003	789	27aa	ENSP00000455524.1	Nonsense mediated decay		H3BPY6	-	-
ENST00000565038.1	PALB2-004	344	30aa	ENSP00000459882.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 344 bps, Translation length: 30 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000565038.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435288 (version 2)