Transcript: ENST00000261584.4 PALB2-001

Description

partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:26144]

Gene Synonyms

FANCN, FLJ21816, PNCA3

Location

About this transcript

This transcript has 13 exons, is annotated with 11 domains and features, is associated with 26089 variant alleles and maps to 433 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261584.4	PALB2-001	4003	1186aa	ENSP00000261584.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32406	Q86YC2	NM_024675.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561514.1	PALB2-006	815	89aa	ENSP00000460666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3R6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566069.1	PALB2-005	619	43aa	ENSP00000459237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568219.1	PALB2-002	3963	35aa	ENSP00000454703.1	Nonsense mediated decay		H3BN63	-	-
ENST00000567003.1	PALB2-003	789	27aa	ENSP00000455524.1	Nonsense mediated decay		H3BPY6	-	-
ENST00000565038.1	PALB2-004	344	30aa	ENSP00000459882.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 4,003 bps, Translation length: 1,186 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YC2

CCDS

This transcript is a member of the Human CCDS set: CCDS32406

Version

ENST00000261584.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000435287 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.