Transcript: ENST00000540184.1 TULP3-006

Description

tubby like protein 3 [Source:HGNC Symbol;Acc:12425]

Gene Synonyms

TUBL3

Location

Chromosome 12: 2,986,389-3,043,728 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 28081 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSG00000078246.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397132.2	TULP3-004	1951	501aa	ENSP00000380321.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53737	F5H7B9 F8WBZ9	NM_001160408.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448120.2	TULP3-001	3076	442aa	ENSP00000410051.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8519	F5H7B9 O75386	NM_003324.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544943.1	TULP3-005	548	137aa	ENSP00000442631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7B9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541678.1	TULP3-008	542	133aa	ENSP00000441319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000538704.1	TULP3-007	449	109aa	ENSP00000440364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545331.1	TULP3-002	1373	39aa	ENSP00000441599.1	Nonsense mediated decay		F5GWL5	-	-
ENST00000538354.1	TULP3-003	1229	39aa	ENSP00000437899.1	Nonsense mediated decay		F5GWL5	-	-
ENST00000540184.1	TULP3-006	978	170aa	ENSP00000444110.1	Nonsense mediated decay		B7Z6A2	-	-

Summary

Statistics

Exons: 9, Coding exons: 6, Transcript length: 978 bps, Translation length: 170 residues

Version

ENST00000540184.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398463 (version 1)

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Transcript: ENST00000540184.1 TULP3-006

Summary