Transcript: ENST00000582735.1 SLC46A1-008

Description

solute carrier family 46 (folate transporter), member 1 [Source:HGNC Symbol;Acc:30521]

Gene Synonyms

G21, HCP1, MGC9564, PCFT

Location

Chromosome 17: 26,726,362-26,731,839 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 2078 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSG00000076351.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000440501.1	SLC46A1-202	6487	459aa	ENSP00000395653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7 Q96NT5	NM_080669.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321666.5	SLC46A1-201	6400	430aa	ENSP00000318828.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JSZ2 J3KTE6 J3QRF7 K7EPJ7	NM_001242366.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584995.1	SLC46A1-006	1030	250aa	ENSP00000464190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581516.1	SLC46A1-005	844	32aa	ENSP00000462942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582735.1	SLC46A1-008	574	124aa	ENSP00000463339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584426.1	SLC46A1-011	564	128aa	ENSP00000467416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584729.1	SLC46A1-001	6374	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000583295.1	SLC46A1-002	5361	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000578217.1	SLC46A1-007	596	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000582590.1	SLC46A1-004	1435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000582345.1	SLC46A1-009	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 574 bps, Translation length: 124 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000582735.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446170 (version 1)

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Transcript: ENST00000582735.1 SLC46A1-008

Summary