Transcript: ENST00000454637.1 CELSR1-002

Description

cadherin, EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:1850]

Gene Synonyms

CDHF9, FMI2, HFMI2, ME2

Location

Chromosome 22: 46,858,677-46,931,191 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 52 domains and features, is associated with 37220 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000075275.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262738.3	CELSR1-001	11389	3014aa	ENSP00000262738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14076	Q8NDT0 Q9NYQ6	NM_014246.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395964.1	CELSR1-201	4194	1397aa	ENSP00000379293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDM9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454637.1	CELSR1-002	2446	772aa	ENSP00000414689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497509.1	CELSR1-004	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468025.1	CELSR1-005	623	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473624.1	CELSR1-003	3453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,446 bps, Translation length: 772 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000454637.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318038 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000454637.1 CELSR1-002

Summary