Transcript: ENST00000551200.1 NUP37-002

Description

nucleoporin 37kDa [Source:HGNC Symbol;Acc:29929]

Gene Synonyms

FLJ22618, MGC5585, p37

Location

Chromosome 12: 102,470,771-102,513,869 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 17661 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSG00000075188.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000552283.1	NUP37-001	1286	326aa	ENSP00000448054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9089	F8VXF5 Q8NFH4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000251074.1	NUP37-201	1203	326aa	ENSP00000251074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9089	F8VXF5 Q8NFH4	NM_024057.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551744.2	NUP37-008	762	208aa	ENSP00000448086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VTY2 F8VXF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550459.1	NUP37-005	645	51aa	ENSP00000449982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547269.1	NUP37-006	798	31aa	ENSP00000447284.1	Nonsense mediated decay		H0YHK8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000543021.1	NUP37-003	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548994.1	NUP37-004	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551200.1	NUP37-002	1158	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546385.1	NUP37-007	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,158 bps,

Version

ENST00000551200.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409333 (version 1)

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Transcript: ENST00000551200.1 NUP37-002

Summary