Transcript: ENST00000599693.1 XRCC1-009

Description

X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:HGNC Symbol;Acc:12828]

Gene Synonyms

RCC

Location

Chromosome 19: 44,057,143-44,084,586 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 12407 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000073050.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262887.5	XRCC1-001	2802	633aa	ENSP00000262887.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12624	M4WFF9 P18887	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543982.1	XRCC1-002	1994	602aa	ENSP00000443671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8D7 M4WFF9	NM_006297.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000598165.1	XRCC1-008	913	292aa	ENSP00000470045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYS5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599693.1	XRCC1-009	628	210aa	ENSP00000472128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000594107.1	XRCC1-003	586	172aa	ENSP00000471159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R0D2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597811.1	XRCC1-007	809	165aa	ENSP00000470391.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000595789.1	XRCC1-006	1147	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598422.1	XRCC1-005	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594511.1	XRCC1-004	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 628 bps, Translation length: 210 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000599693.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000463200 (version 1)

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Transcript: ENST00000599693.1 XRCC1-009

Summary