Transcript: ENST00000543982.1 XRCC1-002

Description

X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:HGNC Symbol;Acc:12828]

Gene Synonyms

RCC

Location

Chromosome 19: 44,047,464-44,079,715 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 20 domains and features, is associated with 16067 variant alleles and maps to 500 oligo probes.

Gene

This transcript is a product of gene ENSG00000073050.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262887.5	XRCC1-001	2802	633aa	ENSP00000262887.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12624	M4WFF9 P18887	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543982.1	XRCC1-002	1994	602aa	ENSP00000443671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8D7 M4WFF9	NM_006297.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000598165.1	XRCC1-008	913	292aa	ENSP00000470045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYS5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599693.1	XRCC1-009	628	210aa	ENSP00000472128.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000594107.1	XRCC1-003	586	172aa	ENSP00000471159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R0D2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597811.1	XRCC1-007	809	165aa	ENSP00000470391.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000595789.1	XRCC1-006	1147	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598422.1	XRCC1-005	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594511.1	XRCC1-004	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 1,994 bps, Translation length: 602 residues

Version

ENST00000543982.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000463195 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000543982.1 XRCC1-002

Summary