Transcript: ENST00000393600.3 FAM50A-001

Description

family with sequence similarity 50, member A [Source:HGNC Symbol;Acc:18786]

Gene Synonyms

9F, DXS9928E, HXC-26, HXC26, XAP5

Location

Chromosome X: 153,672,473-153,679,002 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 2565 variant alleles and maps to 529 oligo probes.

Gene

This transcript is a product of gene ENSG00000071859.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393600.3	FAM50A-001	1352	339aa	ENSP00000377225.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14751	B0S8I6 Q14320 Q6PJH5	NM_004699.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000158526.9	FAM50A-002	1240	260aa	ENSP00000158526.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0S8I6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464419.1	FAM50A-005	1470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481619.1	FAM50A-007	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478509.1	FAM50A-004	682	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490480.1	FAM50A-003	346	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494278.1	FAM50A-006	294	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,352 bps, Translation length: 339 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14320

CCDS

This transcript is a member of the Human CCDS set: CCDS14751

Version

ENST00000393600.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000081643 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000393600.3 FAM50A-001

Summary