Transcript: ENST00000446552.1 ATP6AP1-008

Description

ATPase, H+ transporting, lysosomal accessory protein 1 [Source:HGNC Symbol;Acc:868]

Gene Synonyms

16A, ATP6IP1, ATP6S1, Ac45, CF2, ORF, VATPS1, XAP-3, XAP3

Location

Chromosome X: 153,657,035-153,660,225 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 1218 variant alleles and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSG00000071553.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000369762.2	ATP6AP1-001	2099	470aa	ENSP00000358777.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35451	Q15904 Q9H0C7	NM_001183.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422890.1	ATP6AP1-003	867	273aa	ENSP00000398511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NLC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449556.1	ATP6AP1-010	720	230aa	ENSP00000392375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6QRJ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455205.1	ATP6AP1-002	4515	133aa	ENSP00000396643.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000429585.1	ATP6AP1-006	769	128aa	ENSP00000408470.1	Nonsense mediated decay		H7C2Y8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000439372.1	ATP6AP1-007	604	134aa	ENSP00000408317.1	Nonsense mediated decay		F2Z3L8	-	-
ENST00000446552.1	ATP6AP1-008	571	134aa	ENSP00000411209.1	Nonsense mediated decay		F2Z3L8	-	-
ENST00000484908.1	ATP6AP1-009	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491569.1	ATP6AP1-004	2079	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 571 bps, Translation length: 134 residues

Version

ENST00000446552.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000316575 (version 2)

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Transcript: ENST00000446552.1 ATP6AP1-008

Summary