Transcript: ENST00000565228.1 VPS35-010

Description

vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13487]

Gene Synonyms

FLJ10752, MEM3, PARK17

Location

Chromosome 16: 46,710,490-46,711,598 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 455 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSG00000069329.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299138.7	VPS35-001	6780	796aa	ENSP00000299138.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10721	Q96QK1	NM_018206.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568784.2	VPS35-002	4017	48aa	ENSP00000456274.2	Nonsense mediated decay		H3BRJ7	-	-
ENST00000568612.1	VPS35-008	697	41aa	ENSP00000461469.1	Nonsense mediated decay		I3L4S0	-	-
ENST00000561713.1	VPS35-005	589	47aa	ENSP00000461423.1	Nonsense mediated decay		I3L4P4	-	-
ENST00000568642.1	VPS35-012	447	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569950.1	VPS35-003	1096	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563984.1	VPS35-004	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563884.1	VPS35-006	759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562420.1	VPS35-011	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568191.1	VPS35-007	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565228.1	VPS35-010	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 487 bps,

Version

ENST00000565228.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430595 (version 1)

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Transcript: ENST00000565228.1 VPS35-010

Summary