Transcript: ENST00000409024.3 POLR1A-004

Description

polymerase (RNA) I polypeptide A, 194kDa [Source:HGNC Symbol;Acc:17264]

Gene Synonyms

A190, DKFZP586M0122, FLJ21915, RPA1, RPA194, RPO1-4, RPO14

Location

Chromosome 2: 86,310,205-86,332,997 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 9779 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000068654.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263857.6	POLR1A-001	12749	1720aa	ENSP00000263857.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42706	B7Z8X7 O95602 Q53T12 Q96AG9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409681.1	POLR1A-002	6454	1659aa	ENSP00000386300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9ZVN9	NM_015425.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424089.1	POLR1A-005	576	42aa	ENSP00000397321.1	Nonsense mediated decay		F2Z3I7	-	-
ENST00000409024.3	POLR1A-004	560	42aa	ENSP00000386423.3	Nonsense mediated decay		F2Z3I7	-	-
ENST00000483538.1	POLR1A-006	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492034.1	POLR1A-009	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496892.1	POLR1A-010	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462078.1	POLR1A-008	469	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471427.1	POLR1A-011	290	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486964.1	POLR1A-003	1427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 560 bps, Translation length: 42 residues

Version

ENST00000409024.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329833 (version 2)

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Transcript: ENST00000409024.3 POLR1A-004

Summary