Transcript: ENST00000520381.1 ARFGEF1-003

Description

ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) [Source:HGNC Symbol;Acc:15772]

Gene Synonyms

ARFGEP1, BIG1, DKFZP434L057, P200, p200

Location

Chromosome 8: 68,085,747-68,179,679 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 16 domains and features, is associated with 41435 variant alleles and maps to 792 oligo probes.

Gene

This transcript is a product of gene ENSG00000066777.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262215.3	ARFGEF1-001	7225	1849aa	ENSP00000262215.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6199	B3KMS9 E5RHZ1 E5RJB2 E5RJN9 Q9Y6D6	NM_006421.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520381.1	ARFGEF1-003	5876	1254aa	ENSP00000428429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIF2 E5RJB2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518230.1	ARFGEF1-007	2718	702aa	ENSP00000430891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518789.1	ARFGEF1-006	750	155aa	ENSP00000429560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHZ1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519436.1	ARFGEF1-002	571	118aa	ENSP00000429002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJN9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517631.1	ARFGEF1-011	399	122aa	ENSP00000429138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJB2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517955.1	ARFGEF1-009	1235	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522878.1	ARFGEF1-010	646	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518290.1	ARFGEF1-005	3179	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 5,876 bps, Translation length: 1,254 residues

Version

ENST00000520381.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000379511 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000520381.1 ARFGEF1-003

Summary