Transcript: ENST00000442985.1 SPEN-004

Description

spen family transcriptional repressor [Source:HGNC Symbol;Acc:17575]

Gene Synonyms

HIAA0929, KIAA0929, MINT, RBM15C, SHARP

Location

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 19795 variant alleles and maps to 160 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375759.3	SPEN-001	12232	3664aa	ENSP00000364912.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS164	Q96T58	NM_015001.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438066.1	SPEN-002	1733	373aa	ENSP00000388021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6WRY4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442985.1	SPEN-004	891	297aa	ENSP00000400914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000471538.1	SPEN-003	1404	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487496.1	SPEN-005	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 891 bps, Translation length: 297 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000442985.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000025996 (version 1)