Transcript: ENST00000539506.1 SFSWAP-009

Description

splicing factor, suppressor of white-apricot homolog (Drosophila) [Source:HGNC Symbol;Acc:10790]

Gene Synonyms

SFRS8, SWAP

Location

Chromosome 12: 132,268,013-132,284,282 forward strand.

About this transcript

This transcript has 5 exons, is associated with 8139 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSG00000061936.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541286.1	SFSWAP-003	3219	1003aa	ENSP00000437738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58290	F5H5X1 Q12872	NM_001261411.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535236.1	SFSWAP-004	5593	546aa	ENSP00000443045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5X1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000261674.4	SFSWAP-001	3246	951aa	ENSP00000261674.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9273	F5H5X1 Q12872	NM_004592.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537164.1	SFSWAP-008	961	320aa	ENSP00000439957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000538548.1	SFSWAP-005	2636	121aa	ENSP00000445832.1	Nonsense mediated decay		F5H1A5	-	-
ENST00000539506.1	SFSWAP-009	3149	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542813.1	SFSWAP-002	373	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000540469.1	SFSWAP-007	3536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537582.1	SFSWAP-010	1576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535399.1	SFSWAP-006	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535202.1	SFSWAP-011	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 3,149 bps,

Version

ENST00000539506.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399284 (version 1)

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Transcript: ENST00000539506.1 SFSWAP-009

Summary