Transcript: ENST00000261674.4 SFSWAP-001

Description

splicing factor, suppressor of white-apricot homolog (Drosophila) [Source:HGNC Symbol;Acc:10790]

Gene Synonyms

SFRS8, SWAP

Location

Chromosome 12: 132,195,634-132,284,282 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 29 domains and features, is associated with 41159 variant alleles and maps to 753 oligo probes.

Gene

This transcript is a product of gene ENSG00000061936.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000535236.1	SFSWAP-004	5593	546aa	ENSP00000443045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5X1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000261674.4	SFSWAP-001	3246	951aa	ENSP00000261674.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9273	F5H5X1 Q12872	NM_004592.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541286.1	SFSWAP-003	3219	1003aa	ENSP00000437738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58290	F5H5X1 Q12872	NM_001261411.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537164.1	SFSWAP-008	961	320aa	ENSP00000439957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000538548.1	SFSWAP-005	2636	121aa	ENSP00000445832.1	Nonsense mediated decay		F5H1A5	-	-
ENST00000539506.1	SFSWAP-009	3149	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542813.1	SFSWAP-002	373	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000540469.1	SFSWAP-007	3536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537582.1	SFSWAP-010	1576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535399.1	SFSWAP-006	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535202.1	SFSWAP-011	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,246 bps, Translation length: 951 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12872

CCDS

This transcript is a member of the Human CCDS set: CCDS9273

Version

ENST00000261674.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399276 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000261674.4 SFSWAP-001

Summary