Transcript: ENST00000540658.1 RIMBP2-004

Description

RIMS binding protein 2 [Source:HGNC Symbol;Acc:30339]

Gene Synonyms

KIAA0318, MGC15831, RBP2, RIM-BP2, RP11-662M24.2

Location

Chromosome 12: 130,881,855-130,892,375 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 4616 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSG00000060709.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261655.4	RIMBP2-001	6321	1052aa	ENSP00000261655.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31925	F5H3X3 O15034	NM_015347.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536002.1	RIMBP2-201	3868	645aa	ENSP00000439159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15034	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535703.1	RIMBP2-002	3685	645aa	ENSP00000440347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15034	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536632.1	RIMBP2-005	994	157aa	ENSP00000439030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3X3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540658.1	RIMBP2-004	552	62aa	ENSP00000439437.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544568.1	RIMBP2-003	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 552 bps, Translation length: 62 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000540658.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399521 (version 1)

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Transcript: ENST00000540658.1 RIMBP2-004

Summary