Transcript: ENST00000552612.1 PKP2-005

Description

plakophilin 2 [Source:HGNC Symbol;Acc:9024]

Gene Synonyms

ARVD9

Location

Chromosome 12: 32,973,823-32,977,073 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1577 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000057294.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000070846.6	PKP2-002	4241	881aa	ENSP00000070846.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8731	Q99959	NM_004572.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000340811.4	PKP2-001	4302	837aa	ENSP00000342800.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31771	Q99959	NM_001005242.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546741.1	PKP2-003	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552612.1	PKP2-005	901	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546769.1	PKP2-007	782	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546498.1	PKP2-004	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549461.1	PKP2-006	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 901 bps,

Version

ENST00000552612.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404494 (version 1)

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Transcript: ENST00000552612.1 PKP2-005

Summary