Transcript: ENST00000578109.1 PCGF2-003

Description

polycomb group ring finger 2 [Source:HGNC Symbol;Acc:12929]

Gene Synonyms

MEL-18, MEL18, RNF110, ZNF144

Location

Chromosome 17: 36,891,365-36,904,606 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 6255 variant alleles and maps to 331 oligo probes.

Gene

This transcript is a product of gene ENSG00000056661.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000580830.1	PCGF2-002	3062	344aa	ENSP00000461961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360797.2	PCGF2-201	2604	344aa	ENSP00000354033.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	NM_007144.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581345.1	PCGF2-005	2179	344aa	ENSP00000463440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579882.1	PCGF2-001	1534	257aa	ENSP00000464553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT13 J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585100.1	PCGF2-004	1499	257aa	ENSP00000462755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT13 J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578109.1	PCGF2-003	1196	203aa	ENSP00000464513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578487.1	PCGF2-006	459	66aa	ENSP00000462537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,196 bps, Translation length: 203 residues

Version

ENST00000578109.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs1138349, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442248 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000578109.1 PCGF2-003

Summary