Transcript: ENST00000532721.1 RCN1-005

Description

reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9934]

Gene Synonyms

FLJ37041, HEL-S-84, PIG20, RCAL, RCN, Rcal

Location

Chromosome 11: 32,113,156-32,120,004 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2857 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSG00000049449.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000054950.3	RCN1-002	2572	331aa	ENSP00000054950.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7876	E9PLM2 E9PP27 H0YDA4 Q15293 Q5J7V8	NM_002901.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532942.1	RCN1-001	1191	280aa	ENSP00000436422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z1M1 E9PLM2 E9PP27 H0YDA4 Q5J7V8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528630.1	RCN1-008	549	28aa	ENSP00000433237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YDA4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530348.1	RCN1-013	527	58aa	ENSP00000436482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLM2 E9PP27	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532721.1	RCN1-005	494	19aa	ENSP00000433249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527337.1	RCN1-007	737	57aa	ENSP00000436427.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506388.2	RCN1-011	1658	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532474.1	RCN1-006	714	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530146.1	RCN1-012	635	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531345.1	RCN1-004	2653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533898.1	RCN1-003	2416	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 494 bps, Translation length: 19 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000532721.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388513 (version 1)

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Transcript: ENST00000532721.1 RCN1-005

Summary