Transcript: ENST00000054950.3 RCN1-002

Description

reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9934]

Gene Synonyms

FLJ37041, HEL-S-84, PIG20, RCAL, RCN, Rcal

Location

Chromosome 11: 32,112,450-32,127,301 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 24 domains and features, is associated with 6429 variant alleles and maps to 427 oligo probes.

Gene

This transcript is a product of gene ENSG00000049449.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000054950.3	RCN1-002	2572	331aa	ENSP00000054950.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7876	E9PLM2 E9PP27 H0YDA4 Q15293 Q5J7V8	NM_002901.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532942.1	RCN1-001	1191	280aa	ENSP00000436422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z1M1 E9PLM2 E9PP27 H0YDA4 Q5J7V8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528630.1	RCN1-008	549	28aa	ENSP00000433237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YDA4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530348.1	RCN1-013	527	58aa	ENSP00000436482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLM2 E9PP27	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532721.1	RCN1-005	494	19aa	ENSP00000433249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000527337.1	RCN1-007	737	57aa	ENSP00000436427.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000506388.2	RCN1-011	1658	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532474.1	RCN1-006	714	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530146.1	RCN1-012	635	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531345.1	RCN1-004	2653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533898.1	RCN1-003	2416	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,572 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15293

CCDS

This transcript is a member of the Human CCDS set: CCDS7876

Version

ENST00000054950.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000388510 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000054950.3 RCN1-002

Summary