Transcript: ENST00000525124.1 DEPDC1-004

Description

DEP domain containing 1 [Source:HGNC Symbol;Acc:22949]

Gene Synonyms

DEP.8, DEPDC1-V2, DEPDC1A, FLJ20354, SDP35

Location

Chromosome 1: 68,952,624-68,962,765 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 4145 variant alleles and maps to 190 oligo probes.

Gene

This transcript is a product of gene ENSG00000024526.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000456315.2	DEPDC1-002	5331	811aa	ENSP00000412292.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44159	E9PL61 Q5TB30	NM_001114120.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370966.5	DEPDC1-001	4586	527aa	ENSP00000360005.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS644	E9PL61 Q5TB30	NM_017779.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525124.1	DEPDC1-004	582	34aa	ENSP00000431477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL61	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489862.1	DEPDC1-003	1613	308aa	ENSP00000436464.1	Nonsense mediated decay		E9PL61 Q69YG3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488146.1	DEPDC1-005	2658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 582 bps, Translation length: 34 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000525124.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000025516 (version 2)

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Transcript: ENST00000525124.1 DEPDC1-004

Summary